PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3474_p3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 326aa    MW: 36475.2 Da    PI: 4.5996
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3474_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.81.1e-1777127155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 + ++GVr++  +g+WvAeIr+p   + r  r +lg+f taeeAa a+++a++ ++g
  RrC3474_p3  77 CSFRGVRQRI-WGKWVAEIREP---N-RgPRLWLGTFPTAEEAALAYDEAARVMYG 127
                 579****998.**********8...2.35**********************99887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.7E-1277127IPR001471AP2/ERF domain
CDDcd000182.79E-3077136No hitNo description
PROSITE profilePS5103221.91878136IPR001471AP2/ERF domain
SMARTSM003801.1E-3678142IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.5E-3078137IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-1979137IPR016177DNA-binding domain
PRINTSPR003671.4E-97990IPR001471AP2/ERF domain
PRINTSPR003671.4E-9101117IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MAVYDHSGDT NSTQLDTSRK RKSRSRRDGT TVAERLRVWK EYNDNIEEAS PKKRKVPAKG  60
SKKGCMKGKG GPENSRCSFR GVRQRIWGKW VAEIREPNRG PRLWLGTFPT AEEAALAYDE  120
AARVMYGPSV ARLNFPQKSV SDVISTSSQS EVCTAGTSGR VHVKTEDADC DSEHFLGEAD  180
PLENGVGEIK NDVKVDAPST DWLGEFEQKY WSEVLEEKEK QKQKKQVGTC EKQLDSVSVA  240
DYGWPEDLDQ TQWDPSEMFD VSELLGDLNG DIFASSNQSQ YPWDNGTEKQ QTGLQGLDSG  300
YGLPPLELEV QDGNESFDLS FLDLEK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-1679136360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11722SRKRKS
22027RKSRSRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896311e-137AC189631.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS003K07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013719025.11e-154PREDICTED: dehydration-responsive element-binding protein 2A-like
SwissprotO821321e-141DRE2A_ARATH; Dehydration-responsive element-binding protein 2A
TrEMBLA0A078ESL41e-155A0A078ESL4_BRANA; BnaAnng01320D protein
STRINGAT5G05410.11e-138(Arabidopsis thaliana)
STRINGBra028759.1-P1e-139(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28741765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.11e-113DRE-binding protein 2A